Wow I'm an idiot!!! I figured this out myself. I had all of my games in the cyclods folder and it wouldnt show them. So I moved all of them into a games folder and it worked fine. Even updated to 1.61 and it still didnt work. All I had to do was move them to a different folder. Anybody new out there save some time and do it the right way first!
I just bought a Nintendo DS Lite and a Cyclo DS evolution Black. The DS is Version 1.4. I have games in .nds format. I copied the games to my Kingston 4gb micro sd card. I put the sd card into the cyclo DS and then into the DSL. After you load the CYCLo DS program on the DSL The folder is empty. There are clearly on the microsd card because I have restarted my computer multiple times to make sure they havent been deleted off the microsd card. Anybody have any idea what i need to do?